PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 290aa    MW: 32494.9 Da    PI: 6.7472
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089950.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024114136123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_010089950.1 114 FSCNYCQRKFYSSQALGGHQNAH 136
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-6111141No hitNo description
PROSITE profilePS5015711.427114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEPTKNEPCP VSNISPPDDD DDDDDVNDQI KEIKIDIVEK EDEEEDQTII NKSNVMSLDL  60
NLNNSGKSLE LNLIDCLDSS TTMSNSSQTT SCTPSQNKMI STTQGSDNSE QRVFSCNYCQ  120
RKFYSSQALG GHQNAHKRER TLAKRSGQRL MGISDHHRIF GHQYHPYFDR IQWSSMASLP  180
LHGAYNNRSL GIQVHSMIHK QPNNSFGNSN NIMYGQPAIG KHTTAGLLSS KASSAGRFDH  240
VSKGIIGSPN QYERIGRYTN WCGGGGDRLI MNTDHHHKEE IRKLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089950.10.0Zinc finger protein 3
TrEMBLW9R5P90.0W9R5P9_9R
STRINGVIT_04s0008g05930.t011e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-35zinc finger protein 3